상단메뉴
글로벌메뉴
좌측메뉴
검색
프로필
이주영
/ School of Computational Sciences
Protein Folding; Bioinformatics; Global Optimization
단백질 구조 예측과 생물정보에 관한 연구를 하고 있다. 이 연구는 주어진 특정 단백질 아미노산 서열만을 근거로 하여, 여러 가지 계산 도구와 생물정보를 이용하여 그 단백질의 삼차원 구조를 예측하는 것이 주 목적이다. 생물학적 구조 현상을 이해하기 위해서는 단백질의 삼차원 구조가 반드시 필요함에도 불구하고, 아미노산 서열이 밝혀진 단백질 중에서 그 구조가 알려진 것은 극소수이다. 또 다른 연구 분야는 단백질 접힘에 관한 것으로 아미노산 서열의 일차원 구조로부터 어떤 메커니즘을 통하여 삼차원 구조를 이루는 과정을 알아보는 연구이다. 구조마다 독특한 접힘경로를 통하여 입체구조를 형성하는 과정을 연구하고 있다. 이와 같은 연구는 단백질의 이상으로 발생하는 당뇨병, 알츠하이머, 광우병 등의 난치병 연구에서도 중요한 역할을 수행하게 된다.
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Title : Methods for estimation of model accuracy in CASP12 Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.86, 361-373p. 2018
논문 NUMBER AUTHOR Elofsson, Arne; Joo, Keehyoung; Keasar, Chen; Lee, Jooyoung; Maghrabi, Ali H. A.; Manavalan, Balachandran; McGuffin, Liam J.; Hurtado, David Menendez; Mirabello, Claudio; Pilstal, Robert; Sidi, Tomer; Uziela, Karolis; Wallner, Bjorn TITLE Methods for estimation of model accuracy in CASP12 ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.86, 361-373p. 2018 ABSTRACT
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Title : Data-assisted protein structure modeling by global optimization in CASP12 Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.86, 240-246p. 2018
논문 NUMBER AUTHOR Joo, Keehyoung; Heo, Seungryong; Joung, InSuk; Hong, Seung Hwan; Lee, Sung Jong; Lee, Jooyoung TITLE Data-assisted protein structure modeling by global optimization in CASP12 ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.86, 240-246p. 2018 ABSTRACT
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Title : Protein structure modeling and refinement by global optimization in CASP12 Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.86, 122-135p. 2018
논문 NUMBER AUTHOR Hong, Seung Hwan; Joung, InSuk; Flores-Canales, Jose C.; Manavalan, Balachandran; Cheng, Qianyi; Heo, Seungryong; Kim, Jong Yun; Lee, Sun Young; Nam, Mikyung; Joo, Keehyoung; Lee, In-Ho; Lee, Sung Jong; Lee, Jooyoung TITLE Protein structure modeling and refinement by global optimization in CASP12 ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.86, 122-135p. 2018 ABSTRACT
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Title : An artificially constructed dimer through deformation of a short zinc-binding loop Journal : BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS v.1866(2), 205-213p. 2018
논문 NUMBER AUTHOR Park, Jimin; Kim, Mi-Sun; Joo, Keehyoung; Lee, Jooyoung; Shin, Dong Hae TITLE An artificially constructed dimer through deformation of a short zinc-binding loop ARCHIVE FILE JOURNAL BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS v.1866(2), 205-213p. 2018 ABSTRACT
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Title : Conformational Space Annealing explained: A general optimization algorithm, with diverse applications Journal : COMPUTER PHYSICS COMMUNICATIONS v.223, 28-33p. 2018
논문 NUMBER AUTHOR Joung, InSuk; Kim, Jong Yun; Gross, Steven P.; Joo, Keehyoung; Lee, Jooyoung TITLE Conformational Space Annealing explained: A general optimization algorithm, with diverse applications ARCHIVE FILE JOURNAL COMPUTER PHYSICS COMMUNICATIONS v.223, 28-33p. 2018 ABSTRACT
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Title : Ergodicity and Model Quality in Template-Restrained Canonical and Temperature/Hamiltonian Replica Exchange Coarse-Grained Molecular Dynamics Simulations of Proteins Journal : JOURNAL OF COMPUTATIONAL CHEMISTRY v.38(31), 2730-2746p. 2017
논문 NUMBER K17042 AUTHOR Karczynska, Agnieszka S.; Czaplewski, Cezary; Krupa, Pawel; Mozolewska, Magdalena A.; Joo, Keehyoung; Lee, Jooyoung; Liwo, Adam TITLE Ergodicity and Model Quality in Template-Restrained Canonical and Temperature/Hamiltonian Replica Exchange Coarse-Grained Molecular Dynamics Simulations of Proteins ARCHIVE FILE JOURNAL JOURNAL OF COMPUTATIONAL CHEMISTRY v.38(31), 2730-2746p. 2017 ABSTRACT
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Title : A Simple and Efficient Protein Structure Refinement Method Journal : JOURNAL OF CHEMICAL THEORY AND COMPUTATION v.13(10), 5146-5162p. 2017
논문 NUMBER AUTHOR Cheng, Qianyi; Joung, InSuk; Lee, Jooyoung TITLE A Simple and Efficient Protein Structure Refinement Method ARCHIVE FILE JOURNAL JOURNAL OF CHEMICAL THEORY AND COMPUTATION v.13(10), 5146-5162p. 2017 ABSTRACT
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Title : Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise Journal : SCIENTIFIC REPORTS v.7, 12399. 2017
논문 NUMBER AUTHOR Lee, Juyong; Zhang, Zhong-Yuan; Lee, Jooyoung; Brooks, Bernard R.; Ahn, Yong-Yeol TITLE Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise ARCHIVE FILE JOURNAL SCIENTIFIC REPORTS v.7, 12399. 2017 ABSTRACT
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Title : Architecture of the type IV coupling protein complex of Legionella pneumophila Journal : NATURE MICROBIOLOGY v.2(9), 17114. 2017
논문 NUMBER K17041 AUTHOR Kwak, Mi-Jeong; Kim, J. Dongun; Kim, Hyunmin; Kim, Cheolhee; Bowman, James W.; Kim, Seonghoon; Joo, Keehyoung; Lee, Jooyoung; Jin, Kyeong Sik; Kim, Yeon-Gil; Lee, Nam Ki; Jung, Jae U.; Oh, Byung-Ha TITLE Architecture of the type IV coupling protein complex of Legionella pneumophila ARCHIVE FILE JOURNAL NATURE MICROBIOLOGY v.2(9), 17114. 2017 ABSTRACT
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Title : SVMQA: support-vector-machine-based protein single-model quality assessment Journal : BIOINFORMATICS v.33(16), 2496-2503p. 2017
논문 NUMBER AUTHOR Manavalan, Balachandran; Lee, Jooyoung TITLE SVMQA: support-vector-machine-based protein single-model quality assessment ARCHIVE FILE JOURNAL BIOINFORMATICS v.33(16), 2496-2503p. 2017 ABSTRACT
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Title : Finding multiple reaction pathways via global optimization of action Journal : NATURE COMMUNICATIONS v.8, 15443. 2017
논문 NUMBER AUTHOR Lee, Juyong; Lee, In-Ho; Joung, Insuk; Lee, Jooyoung; Brooks, Bernard R. TITLE Finding multiple reaction pathways via global optimization of action ARCHIVE FILE JOURNAL NATURE COMMUNICATIONS v.8, 15443. 2017 ABSTRACT
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Title : Protein Loop Structure Prediction Using Conformational Space Annealing Journal : JOURNAL OF CHEMICAL INFORMATION AND MODELING v.57(5), 1068-1078p. 2017
논문 NUMBER AUTHOR Heo, Seungryong; Lee, Juyong; Joo, Keehyoung; Shin, Hang-Cheol; Lee, Jooyoung TITLE Protein Loop Structure Prediction Using Conformational Space Annealing ARCHIVE FILE JOURNAL JOURNAL OF CHEMICAL INFORMATION AND MODELING v.57(5), 1068-1078p. 2017 ABSTRACT
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Title : Template-free modeling by LEE and LEER in CASP11 Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.84, 118-130p. 2016
논문 NUMBER AUTHOR Joung, Insuk; Lee, Sun Young; Cheng, Qianyi; Kim, Jong Yun; Joo, Keehyoung; Lee, Sung Jong; Lee, Jooyoung TITLE Template-free modeling by LEE and LEER in CASP11 ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.84, 118-130p. 2016 ABSTRACT
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Title : Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.84, 323-348p. 2016
논문 NUMBER AUTHOR Lensink, Marc F.; Velankar, Sameer; Kryshtafovych, Andriy; Huang, Shen-You; Schneidman-Duhovny, Dina; Sali, Andrej; Segura, Joan; Fernandez-Fuentes, Narcis; Viswanath, Shruthi; Elber, Ron; Grudinin, Sergei; Popov, Petr; Neveu, Emilie; Lee, Hasup; Bae TITLE Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.84, 323-348p. 2016 ABSTRACT
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Title : Template based protein structure modeling by global optimization in CASP11 Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.84, 221-232p. 2016
논문 NUMBER AUTHOR Joo, Keehyoung; Joung, Insuk; Lee, Sun Young; Kim, Jong Yun; Cheng, Qianyi; Manavalan, Balachandran; Joung, Jong Young; Heo, Seungryong; Lee, Juyong; Nam, Mikyung; Lee, In-Ho; Lee, Sung Jong; Lee, Jooyoung TITLE Template based protein structure modeling by global optimization in CASP11 ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS v.84, 221-232p. 2016 ABSTRACT
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Title : Contact-assisted protein structure modeling by global optimization in CASP11 Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. v.84, 189-199p. 2016
논문 NUMBER AUTHOR Joo, Keehyoung; Joung, InSuk; Cheng, Qianyi; Lee, Sung Jong; Lee, Jooyoung TITLE Contact-assisted protein structure modeling by global optimization in CASP11 ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. v.84, 189-199p. 2016 ABSTRACT
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Title : Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field Journal : Journal of Chemical Information and Modeling. 2016, 56 (11), pp 2263–2279
논문 NUMBER AUTHOR Mozolewska, Magdalena A.; Krupa, Pawel; Zaborowski, Bartlomiej; Liwo, Adam; Lee, Jooyoung; Joo, Keehyoung; Czaplewski, Cezary TITLE Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field ARCHIVE FILE JOURNAL Journal of Chemical Information and Modeling. 2016, 56 (11), pp 2263–2279 ABSTRACT
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Title : Crystal Structure of Hypothetical Fructose-Specific EIIB from Escherichia coli Journal : MOLECULES AND CELLS 39(6): 495–500. (2016)
논문 NUMBER AUTHOR Park, Jimin; Kim, Mi-Sun; Joo, Keehyung; Jhon, Gil-Ja; Berry, Edward A.; Lee, Jooyoung; Shin, Dong Hae TITLE Crystal Structure of Hypothetical Fructose-Specific EIIB from Escherichia coli ARCHIVE FILE JOURNAL MOLECULES AND CELLS 39(6): 495–500. (2016) ABSTRACT
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Title : Ab initio materials design using conformational space annealing and its application to searching for direct band gap silicon crystals Journal : Computer Physics Communications V. 203, 110–121
논문 NUMBER AUTHOR Lee, In-Ho; Oh, Young Jun; Kim, Sunghyun; Lee, Jooyoung; Chang, K. J. TITLE Ab initio materials design using conformational space annealing and its application to searching for direct band gap silicon crystals ARCHIVE FILE JOURNAL Computer Physics Communications V. 203, 110–121 ABSTRACT
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Title : Direct band gap carbon superlattices with efficient optical transition Journal : PHYSICAL REVIEW B, v.93 no.8 (2016) 085201
논문 NUMBER AUTHOR Oh, YJ; Kim, S; Lee, IH; Lee, J; Chang, KJ TITLE Direct band gap carbon superlattices with efficient optical transition ARCHIVE FILE JOURNAL PHYSICAL REVIEW B, v.93 no.8 (2016) 085201 ABSTRACT
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Title : Dipole-allowed direct band gap silicon superlattices Journal : SCIENTIFIC REPORTS, v.5 (2015) 18086
논문 NUMBER AUTHOR Oh, YJ; Lee, IH; Kim, S; Lee, J; Chang, KJ TITLE Dipole-allowed direct band gap silicon superlattices ARCHIVE FILE JOURNAL SCIENTIFIC REPORTS, v.5 (2015) 18086 ABSTRACT
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Title : Protein structure determination by conformational space annealing using NMR geometric restraints Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v.83 no.12 (2015) 2251-2262
논문 NUMBER AUTHOR Joo, K; Joung, I ; Lee, J; Lee, J; Lee, W; Brooks, B; Lee, SJ; Lee, J TITLE Protein structure determination by conformational space annealing using NMR geometric restraints ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v.83 no.12 (2015) 2251-2262 ABSTRACT
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Title : GS-align for glycan structure alignment and similarity measurement Journal : BIOINFORMATICS, v.31 no.16 (2015) 2653-2659
논문 NUMBER AUTHOR Lee, HS; Jo, S; Mukherjee, S; Park, SJ; Skolnick, J; Lee, J; Im, W TITLE GS-align for glycan structure alignment and similarity measurement ARCHIVE FILE JOURNAL BIOINFORMATICS, v.31 no.16 (2015) 2653-2659 ABSTRACT
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Title : The Atomistic Mechanism of Conformational Transition of Adenylate Kinase Investigated by Lorentzian Structure-Based Potential Journal : JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v.11 no.7 (2015) 3211-3224
논문 NUMBER AUTHOR Lee, J; Joo, K; Brooks, BR; Lee, J TITLE The Atomistic Mechanism of Conformational Transition of Adenylate Kinase Investigated by Lorentzian Structure-Based Potential ARCHIVE FILE JOURNAL JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v.11 no.7 (2015) 3211-3224 ABSTRACT
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Title : Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field Journal : JOURNAL OF CHEMICAL INFORMATION AND MODELING, v.55 no.6 (2015) 1271-1281
논문 NUMBER AUTHOR Krupa, P; Mozolewska, MA; Joo, K; Lee, J; Czaplewski, C; Liwo, A TITLE Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field ARCHIVE FILE JOURNAL JOURNAL OF CHEMICAL INFORMATION AND MODELING, v.55 no.6 (2015) 1271-1281 ABSTRACT
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Title : Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest Journal : BMC BIOINFORMATICS, v.16 (2015) 94
논문 NUMBER AUTHOR Lee, J; Lee, K; Joung, I; Joo, K; Brooks, BR; Lee, J TITLE Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest ARCHIVE FILE JOURNAL BMC BIOINFORMATICS, v.16 (2015) 94 ABSTRACT
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Title : A Folding Pathway Model of Mini-Protein BBA5 Journal : BIOMED RESEARCH INTERNATIONAL, (2015) 828095
논문 NUMBER AUTHOR Lee, IH; Kim, SY; Lee, J TITLE A Folding Pathway Model of Mini-Protein BBA5 ARCHIVE FILE JOURNAL BIOMED RESEARCH INTERNATIONAL, (2015) 828095 ABSTRACT
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Title : Heterozygous mutations in cyclic AMP phosphodiesterase-4D (PDE4D) and protein kinase A (PKA) provide new insights into the molecular pathology of acrodysostosis Journal : CELLULAR SIGNALLING, v.26 no.11 (2014) 2446-2459
논문 NUMBER AUTHOR Kaname, T; Ki, CS; Niikawa, N; Baillie, GS ; Day, JP; Yamamura, K ; Ohta, T; Nishimura, G; Mastuura, N; Kim, OH TITLE Heterozygous mutations in cyclic AMP phosphodiesterase-4D (PDE4D) and protein kinase A (PKA) provide new insights into the molecular pathology of acrodysostosis ARCHIVE FILE JOURNAL CELLULAR SIGNALLING, v.26 no.11 (2014) 2446-2459 ABSTRACT
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Title : Computational search for direct band gap silicon crystals Journal : PHYSICAL REVIEW B, v.90 no.11 (2014) 115209
논문 NUMBER AUTHOR Lee, IH; Lee, J; Oh, YJ; Kim, S; Chang, KJ TITLE Computational search for direct band gap silicon crystals ARCHIVE FILE JOURNAL PHYSICAL REVIEW B, v.90 no.11 (2014) 115209 ABSTRACT
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Title : Random Forest-Based Protein Model Quality Assessment (RFMQA) Using Structural Features and Potential Energy Terms Journal : PLOS ONE, v.9 no.9 (2014) e106542
논문 NUMBER AUTHOR Manavalan, B; Lee, J; Lee, J TITLE Random Forest-Based Protein Model Quality Assessment (RFMQA) Using Structural Features and Potential Energy Terms ARCHIVE FILE JOURNAL PLOS ONE, v.9 no.9 (2014) e106542 ABSTRACT
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Title : Community-Based Network Study of Protein-Carbohydrate Interactions in Plant Lectins Using Glycan Array Data Journal : PLOS ONE, v.9 no.4 (2014) e95480
논문 NUMBER AUTHOR Malik, A; Lee, J; Lee, J TITLE Community-Based Network Study of Protein-Carbohydrate Interactions in Plant Lectins Using Glycan Array Data ARCHIVE FILE JOURNAL PLOS ONE, v.9 no.4 (2014) e95480 ABSTRACT
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Title : Subgrouping Automata: Automatic sequence subgrouping using phylogenetic tree-based optimum subgrouping algorithm Journal : COMPUTATIONAL BIOLOGY AND CHEMISTRY, v.38 (2014) 64-70
논문 NUMBER AUTHOR Seo, JH; Park, J; Kim, EM; Kim, J; Joo, K; Lee, J; Kim, BG TITLE Subgrouping Automata: Automatic sequence subgrouping using phylogenetic tree-based optimum subgrouping algorithm ARCHIVE FILE JOURNAL COMPUTATIONAL BIOLOGY AND CHEMISTRY, v.38 (2014) 64-70 ABSTRACT
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Title : Protein structure modeling for CASP10 by multiple layers of global optimization Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v.82 SI-2 (2014) 188-195
논문 NUMBER AUTHOR Joo, K; Lee, J; Sim, S; Lee, SY; Lee, K; Heo, S; Lee, IH; Lee, SJ; Lee, J TITLE Protein structure modeling for CASP10 by multiple layers of global optimization ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v.82 SI-2 (2014) 188-195 ABSTRACT
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Title : Transition Pathway and Its Free-Energy Profile: A Protocol for Protein Folding Simulations Journal : INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v.14 no.8 (2013) 16058-16075
논문 NUMBER AUTHOR Lee, In-Ho; Kim, Seung-Yeon; Lee, Jooyoung TITLE Transition Pathway and Its Free-Energy Profile: A Protocol for Protein Folding Simulations ARCHIVE FILE JOURNAL INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v.14 no.8 (2013) 16058-16075 ABSTRACT
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Title : Structural basis of intersubunit recognition in elongin BC-cullin 5-SOCS box ubiquitin-protein ligase complexes Journal : ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, v.69 (2013) 1587-1597
논문 NUMBER AUTHOR Kim, YK; Kwak, MJ; Ku, B; Suh, HY; Joo, K; Lee, J; Jung, JU; Oh, BH TITLE Structural basis of intersubunit recognition in elongin BC-cullin 5-SOCS box ubiquitin-protein ligase complexes ARCHIVE FILE JOURNAL ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, v.69 (2013) 1587-1597 ABSTRACT
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Title : Improved network community structure improves function prediction Journal : SCIENTIFIC REPORTS, v.3 (2013) 2197
논문 NUMBER AUTHOR Lee, J; Gross, SP; Lee, J TITLE Improved network community structure improves function prediction ARCHIVE FILE JOURNAL SCIENTIFIC REPORTS, v.3 (2013) 2197 ABSTRACT
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Title : Small Heat Shock Protein IbpB Acts as a Robust Chaperone in Living Cells by Hierarchically Activating Its Multi-type Substrate-binding Residues Journal : JOURNAL OF BIOLOGICAL CHEMISTRY, v.288 no.17 (2012) 11897-11906
논문 NUMBER AUTHOR Fu, XM; Shi, XD; Yin, LX; Liu, JF; Joo, K; Lee, J; Chang, ZY TITLE Small Heat Shock Protein IbpB Acts as a Robust Chaperone in Living Cells by Hierarchically Activating Its Multi-type Substrate-binding Residues ARCHIVE FILE JOURNAL JOURNAL OF BIOLOGICAL CHEMISTRY, v.288 no.17 (2012) 11897-11906 ABSTRACT
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Title : Hidden Information Revealed by Optimal Community Structure from a Protein-Complex Bipartite Network Improves Protein Function Prediction Journal : PLOS ONE, v.8 no.4 (2013) e60372
논문 NUMBER AUTHOR Lee, J; Lee, J TITLE Hidden Information Revealed by Optimal Community Structure from a Protein-Complex Bipartite Network Improves Protein Function Prediction ARCHIVE FILE JOURNAL PLOS ONE, v.8 no.4 (2013) e60372 ABSTRACT
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Title : Generating Reservoir Conformations for Replica Exchange through the Use of the Conformational Space Annealing Method Journal : JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v.9 no.2 (2013) 1115-1124
논문 NUMBER AUTHOR Okur, A; Miller, BT; Joo, K; Lee, J; Brooks, BR TITLE Generating Reservoir Conformations for Replica Exchange through the Use of the Conformational Space Annealing Method ARCHIVE FILE JOURNAL JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v.9 no.2 (2013) 1115-1124 ABSTRACT
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Title : Sann: Solvent accessibility prediction of proteins by nearest neighbor method Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v.80 no.7 (2012) 1791-1797
논문 NUMBER AUTHOR Joo, K; Lee, SJ; Lee, J TITLE Sann: Solvent accessibility prediction of proteins by nearest neighbor method ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v.80 no.7 (2012) 1791-1797 ABSTRACT
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Title : Folding Models of Mini-Protein FSD-1 Journal : JOURNAL OF PHYSICAL CHEMISTRY B, v.116 no.23 (2012) 6916-6922
논문 NUMBER AUTHOR Lee, IH; Kim, SY; Lee, J TITLE Folding Models of Mini-Protein FSD-1 ARCHIVE FILE JOURNAL JOURNAL OF PHYSICAL CHEMISTRY B, v.116 no.23 (2012) 6916-6922 ABSTRACT
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Title : Modularity optimization by conformational space annealing Journal : PHYSICAL REVIEW E, v.85 no.5 (2012) 056702
논문 NUMBER AUTHOR Lee, J; Gross, SP; Lee, J TITLE Modularity optimization by conformational space annealing ARCHIVE FILE JOURNAL PHYSICAL REVIEW E, v.85 no.5 (2012) 056702 ABSTRACT
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Title : LigDockCSA: Protein-Ligand Docking Using Conformational Space Annealing Journal : JOURNAL OF COMPUTATIONAL CHEMISTRY, 32, 3226-3232 (2011)
논문 NUMBER AUTHOR Woong-Hee Shin, Lim Heo, Juyong Lee, Junsu Ko, Chaok Seok, Jooyoung Lee TITLE LigDockCSA: Protein-Ligand Docking Using Conformational Space Annealing ARCHIVE FILE JOURNAL JOURNAL OF COMPUTATIONAL CHEMISTRY, 32, 3226-3232 (2011) ABSTRACT
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Title : Refinement of protein termini in template-based modeling using conformational space annealing Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 79, 2725-2734 (2011)
논문 NUMBER AUTHOR Hahnbeom Park, Junsu Ko, Keehyoung Joo, Julian Lee, Chaok Seok, Jooyoung Lee TITLE Refinement of protein termini in template-based modeling using conformational space annealing ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 79, 2725-2734 (2011) ABSTRACT
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Title : De novo protein structure prediction by dynamic fragment assembly and conformational space annealing Journal : PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 79, 2403-2417 (2011)
논문 NUMBER AUTHOR Juyong Lee, Jinhyuk Lee, Takeshi N Sasaki, Masaki Sasai, Chaok Seok, Jooyoung Lee TITLE De novo protein structure prediction by dynamic fragment assembly and conformational space annealing ARCHIVE FILE JOURNAL PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 79, 2403-2417 (2011) ABSTRACT
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Title : Design and efficient production of bovine enterokinase light chain with higher specificity in E. coli Journal : BIOTECHNOLOGY LETTERS, 33, 1227-1232 (2011)
논문 NUMBER AUTHOR Haarin Chun, Keehyoung Joo, Jooyoung Lee, Hang-Cheol Shin TITLE Design and efficient production of bovine enterokinase light chain with higher specificity in E. coli ARCHIVE FILE JOURNAL BIOTECHNOLOGY LETTERS, 33, 1227-1232 (2011) ABSTRACT
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Title : Necessary and Sufficient Conditions for the Asymmetric Synthesis of Chiral Amines Using v-Aminotransferases Journal : Biotechnol Bioeng. Volume 108, Issue 2, pages 253-263 (2011)
논문 NUMBER AUTHOR Joo-Hyun Seo, Dohyun Kyung, Keehyoung Joo, Jooyoung Lee, Byung-Gee Kim TITLE Necessary and Sufficient Conditions for the Asymmetric Synthesis of Chiral Amines Using v-Aminotransferases ARCHIVE FILE JOURNAL Biotechnol Bioeng. Volume 108, Issue 2, pages 253-263 (2011) ABSTRACT
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Title : Dynamic Folding Pathway Models of the Villin Headpiece Subdomain (HP-36) Structure Journal : J.Comput.Chem. 31, 57 (2009)
논문 NUMBER AUTHOR In-Ho Lee, Seung-Yeon Kim, and Jooyoung Lee TITLE Dynamic Folding Pathway Models of the Villin Headpiece Subdomain (HP-36) Structure ARCHIVE FILE JOURNAL J.Comput.Chem. 31, 57 (2009) ABSTRACT
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Title : Protein-binding site prediction based on three-dimensional protein modeling Journal : Proteins: Structure, Function, and Bioinformatics volume 77, Issue S9, Pages 152-156 (2009)
논문 NUMBER AUTHOR Mina Oh, Keehyoung Joo, Jooyoung Lee TITLE Protein-binding site prediction based on three-dimensional protein modeling ARCHIVE FILE JOURNAL Proteins: Structure, Function, and Bioinformatics volume 77, Issue S9, Pages 152-156 (2009) ABSTRACT
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Title : Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8 Journal : Proteins: Structure, Function, and Bioinformatics volume 77, Issue S9, Pages 114-122 (2009)
논문 NUMBER AUTHOR Elmar Krieger, Keehyoung Joo, Jinwoo Lee, Jooyoung Lee , Srivatsan Raman, James Thompson, Mike Tyka, David Baker, and Kevin Karplus TITLE Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8 ARCHIVE FILE JOURNAL Proteins: Structure, Function, and Bioinformatics volume 77, Issue S9, Pages 114-122 (2009) ABSTRACT
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Title : All-atom chain-building by optimizing MODELLER energy function using conformational space annealing Journal : Proteins: Structure, Function, and Bioinformatics Volume 75, Issue 4, Pages: 1010-1023 (2009)
논문 NUMBER AUTHOR Keehyoung Joo, Jinwoo Lee, Joo-Hyun Seo, Kyoungrim Lee, Byung-Gee Kim, Jooyoung Lee TITLE All-atom chain-building by optimizing MODELLER energy function using conformational space annealing ARCHIVE FILE JOURNAL Proteins: Structure, Function, and Bioinformatics Volume 75, Issue 4, Pages: 1010-1023 (2009) ABSTRACT
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Title : Automatic protein structure prediction system enabling rapid and accurate model building for enzyme screening Journal : Enzyme and Microbial Technology 45 218-225 (2009)
논문 NUMBER AUTHOR Joo-Hyun Seo, Gang-Seong Lee, Juhan Kim, Byung-Kwan Cho, Keehyoung Joo, Jooyoung Lee , Byung-Gee Kim TITLE Automatic protein structure prediction system enabling rapid and accurate model building for enzyme screening ARCHIVE FILE JOURNAL Enzyme and Microbial Technology 45 218-225 (2009) ABSTRACT
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Title : Structural Studies of a Bacterial Condensin Complex Reveal ATP-Dependent Disruption of Intersubunit Interactions Journal : Cell, Volume 136, Issue 1, 85-96 (2009)
논문 NUMBER AUTHOR Jae-Sung Woo, Jae-Hong Lim, Ho-Chul Shin, Min-Kang Suh, Bonsu Ku, Kwang-Hoon Lee, Keehyoung Joo, Howard Robinson, Jooyoung Lee , Sam-Yong Park, Nam-Chul Ha and Byung-Ha Oh TITLE Structural Studies of a Bacterial Condensin Complex Reveal ATP-Dependent Disruption of Intersubunit Interactions ARCHIVE FILE JOURNAL Cell, Volume 136, Issue 1, 85-96 (2009) ABSTRACT
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Title : Re-examination of structure optimization of off-lattice protein AB models by conformational space annealing Journal : JOURNAL OF COMPUTATIONAL CHEMISTRY Vol 29, 14, 2479-2484 (2008)
논문 NUMBER AUTHOR Jinwoo Lee, Keehyung Joo, Seung-Yeon Kim and Jooyong Lee TITLE Re-examination of structure optimization of off-lattice protein AB models by conformational space annealing ARCHIVE FILE JOURNAL JOURNAL OF COMPUTATIONAL CHEMISTRY Vol 29, 14, 2479-2484 (2008) ABSTRACT
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Title : Multiple Sequence Alignment by Conformational Space Annealing Journal : BIOPHYSICAL JOURNAL Vol 95, 10, 4813-4819 (2008)
논문 NUMBER AUTHOR Keehyoung Joo, Jinwoo Lee, Ilsoo Kim, Sung Jong Lee and Jooyoung Lee TITLE Multiple Sequence Alignment by Conformational Space Annealing ARCHIVE FILE JOURNAL BIOPHYSICAL JOURNAL Vol 95, 10, 4813-4819 (2008) ABSTRACT
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Title : Ground-state energy and energy landscape of the Sherrington-Kirkpatrick spin glass Journal : Phys.Rev.B, Vol. 76, 184412-1 - 184412-7 (2007)
논문 NUMBER AUTHOR Seung-Yeon Kim, Sung Jong Lee, and Jooyoung Lee TITLE Ground-state energy and energy landscape of the Sherrington-Kirkpatrick spin glass ARCHIVE FILE JOURNAL Phys.Rev.B, Vol. 76, 184412-1 - 184412-7 (2007) ABSTRACT
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Title : Assessment of predictions submitted for the CASP7 domain prediction category Journal : Proteins, Vol. 69, 137-151 (2007)
논문 NUMBER AUTHOR Michael Tress, Jianlin Cheng, Pierre Baldi, Keehyoung Joo, Jinwoo Lee, Joo-Hyun Seo, Jooyoung Lee , David Baker, Dylan Chivian, David Kim, and Iakes Ezkurdia TITLE Assessment of predictions submitted for the CASP7 domain prediction category ARCHIVE FILE JOURNAL Proteins, Vol. 69, 137-151 (2007) ABSTRACT
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Title : High Accuracy Template Based Modeling by Global Optimization Journal : Proteins, Vol. 69, 83-89 (2007)
논문 NUMBER AUTHOR Keehyoung Joo, Jinwoo Lee, Sunjoong Lee, Joo-Hyun Seo, Sung Jong Lee, and Jooyoung Lee TITLE High Accuracy Template Based Modeling by Global Optimization ARCHIVE FILE JOURNAL Proteins, Vol. 69, 83-89 (2007) ABSTRACT
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Title : Exploring dynamic pathways by action-derived molecular dynamics Journal : INTERNATIONAL JOURNAL OF NANOTECHNOLOGY Vol. 3, 334-352 (2006)
논문 NUMBER AUTHOR In-Ho Lee, Sukky Jun, Hanchul Kim, Seung-Yeon Kim, and Jooyoung Lee TITLE Exploring dynamic pathways by action-derived molecular dynamics ARCHIVE FILE JOURNAL INTERNATIONAL JOURNAL OF NANOTECHNOLOGY Vol. 3, 334-352 (2006) ABSTRACT
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Title : Application of the multiensemble sampling to the equilibrium folding of proteins Journal : Bioinformatics, Vol. 22, 1832-1837 (2006)
논문 NUMBER AUTHOR Hyeon S. Son, Seung-Yeon Kim, Jooyoung Lee, and Kyu-Kwang Han TITLE Application of the multiensemble sampling to the equilibrium folding of proteins ARCHIVE FILE JOURNAL Bioinformatics, Vol. 22, 1832-1837 (2006) ABSTRACT
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Title : Protein structure prediction based on fragment assembly and the beta-strand pairing energy function Journal : JOURNAL OF THE KOREAN PHYSICAL SOCIETY Volume: 46 Issue: 3 Pages: 707-712 (2005)
논문 NUMBER AUTHOR Julian Lee, Seung-Yeon Kim and Jooyoung Lee TITLE Protein structure prediction based on fragment assembly and the beta-strand pairing energy function ARCHIVE FILE JOURNAL JOURNAL OF THE KOREAN PHYSICAL SOCIETY Volume: 46 Issue: 3 Pages: 707-712 (2005) ABSTRACT
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Title : Structure optimization by conformational space annealing in an off-lattice protein model Journal : Physical Review E Vol. 72, 011916 (2005)
논문 NUMBER AUTHOR Seung-Yeon Kim, Sang Bub Lee, and Jooyoung Lee TITLE Structure optimization by conformational space annealing in an off-lattice protein model ARCHIVE FILE JOURNAL Physical Review E Vol. 72, 011916 (2005) ABSTRACT
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Title : Dynamic folding pathway models of a-helix and b-hairpin structures Journal : Chemical Physics Letters Vol. 412, 307-312 (2005)
논문 NUMBER AUTHOR In-Ho Lee, Seung-Yeon Kim, and Jooyoung Lee TITLE Dynamic folding pathway models of a-helix and b-hairpin structures ARCHIVE FILE JOURNAL Chemical Physics Letters Vol. 412, 307-312 (2005) ABSTRACT
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Title : Dynamics of conformational isomerization of alanine dipeptide and valine dipeptide Journal : Journal of the Korean Physical Society, Vol. 46, 601-605 (2005)
논문 NUMBER AUTHOR In-Ho Lee, Seung-Yeon Kim, and Jooyoung Lee TITLE Dynamics of conformational isomerization of alanine dipeptide and valine dipeptide ARCHIVE FILE JOURNAL Journal of the Korean Physical Society, Vol. 46, 601-605 (2005) ABSTRACT
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Title : Protein structure prediction based on fragment assembly and parameter optimization Journal : BIOPHYSICAL CHEMISTRY Vol. 115, 209-214 (2005)
논문 NUMBER AUTHOR Julian Lee, Seung-Yeon Kim, and Jooyoung Lee TITLE Protein structure prediction based on fragment assembly and parameter optimization ARCHIVE FILE JOURNAL BIOPHYSICAL CHEMISTRY Vol. 115, 209-214 (2005) ABSTRACT
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Title : Understanding the structural characteristics of compstatin by conformational space annealing Journal : BIOPHYSICAL CHEMISTRY Vol. 115, 201-207 (2005)
논문 NUMBER AUTHOR MeeKyoung Song, Seung-Yeon Kim, and Jooyoung Lee TITLE Understanding the structural characteristics of compstatin by conformational space annealing ARCHIVE FILE JOURNAL BIOPHYSICAL CHEMISTRY Vol. 115, 201-207 (2005) ABSTRACT
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Title : Folding simulations of small proteins Journal : BIOPHYSICAL CHEMISTRY Vol. 115, 195-200 (2005)
논문 NUMBER AUTHOR Seung-Yeon Kim, Julian Lee, and Jooyoung Lee TITLE Folding simulations of small proteins ARCHIVE FILE JOURNAL BIOPHYSICAL CHEMISTRY Vol. 115, 195-200 (2005) ABSTRACT
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Title : PPRODO: Prediction of Protein Domain Boundaries Using Neural Networks Proteins Journal : Proteins: Structure, Function, and Genetics, Vol. 59, 627-632 (2005)
논문 NUMBER AUTHOR Jaehyun Sim, Seung-Yeon Kim, and Jooyoung Lee TITLE PPRODO: Prediction of Protein Domain Boundaries Using Neural Networks Proteins ARCHIVE FILE JOURNAL Proteins: Structure, Function, and Genetics, Vol. 59, 627-632 (2005) ABSTRACT
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Title : Study of Protein-Protein Interaction Using Conformational Space Annealing Journal : Proteins: Structure, Function, and Genetics, Vol. 60, 257-262 (2005)
논문 NUMBER AUTHOR Kyoungrim Lee, Jaehyun Sim, and Jooyoung Lee TITLE Study of Protein-Protein Interaction Using Conformational Space Annealing ARCHIVE FILE JOURNAL Proteins: Structure, Function, and Genetics, Vol. 60, 257-262 (2005) ABSTRACT
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Title : An efficient molecular docking using conformational space annealing Journal : J. Comput. Chem., Vol. 26, 78-87 (2005)
논문 NUMBER AUTHOR Kyoungrim Lee, Cezary Czaplewski, Kim Seung-Yeon, and Jooyoung Lee TITLE An efficient molecular docking using conformational space annealing ARCHIVE FILE JOURNAL J. Comput. Chem., Vol. 26, 78-87 (2005) ABSTRACT
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Title : Identification of the protein native structure by using a sequence-dependent feature in contact maps Journal : Journal of the Korean Physical Society, Vol. 46, 625-630 (2005)
논문 NUMBER AUTHOR Jaewoon Jung, Jooyoung Lee, and Hie-Tae Moon TITLE Identification of the protein native structure by using a sequence-dependent feature in contact maps ARCHIVE FILE JOURNAL Journal of the Korean Physical Society, Vol. 46, 625-630 (2005) ABSTRACT
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Title : Topological determinants of protein unfolding rates Journal : Proteins: Structure, Function, and Genetics, Vol. 58, 389-395 (2005)
논문 NUMBER AUTHOR Jaewoon Jung, Jooyoung Lee, and Hie-Tae Moon TITLE Topological determinants of protein unfolding rates ARCHIVE FILE JOURNAL Proteins: Structure, Function, and Genetics, Vol. 58, 389-395 (2005) ABSTRACT
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Title : Prediction of the secondary structures of proteins by using PREDICT, a nearest neighbor method on pattern space Journal : Journal of the Korean Physical Society, Vol. 45, 1441-1449 (2004)
논문 NUMBER AUTHOR Keehyung Joo, Ilsoo Kim, Seung-Yeon Kim, Julian Lee, Sung Jong Lee, and Jooyoung Lee TITLE Prediction of the secondary structures of proteins by using PREDICT, a nearest neighbor method on pattern space ARCHIVE FILE JOURNAL Journal of the Korean Physical Society, Vol. 45, 1441-1449 (2004) ABSTRACT
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Title : Prediction of Protein Tertiary Structure Using PROFESY, a Novel Method Based on Fragment Assembly and Conformational Space Annealing Journal : Proteins, Vol. 56, 704-714 (2004)
논문 NUMBER AUTHOR Julian Lee, Seung-Yeon Kim, Keehyung Joo, Ilsoo Kim, and Jooyoung Lee TITLE Prediction of Protein Tertiary Structure Using PROFESY, a Novel Method Based on Fragment Assembly and Conformational Space Annealing ARCHIVE FILE JOURNAL Proteins, Vol. 56, 704-714 (2004) ABSTRACT
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Title : Predicting the three dimensional structures of proteins: combined alignment approach Journal : Journal of the Korean Physical Society, Vol. 44, 611-616 (2004)
논문 NUMBER AUTHOR Jaehyun Sim, Seung-Yeon Kim, A.Yoo, and Jooyoung Lee TITLE Predicting the three dimensional structures of proteins: combined alignment approach ARCHIVE FILE JOURNAL Journal of the Korean Physical Society, Vol. 44, 611-616 (2004) ABSTRACT
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Title : Accurate transition pathway calculation for rare events Journal : Journal of the Korean Physical Society, Vol. 44, 605-610 (2004)
논문 NUMBER AUTHOR In-Ho Lee, and Jooyoung Lee TITLE Accurate transition pathway calculation for rare events ARCHIVE FILE JOURNAL Journal of the Korean Physical Society, Vol. 44, 605-610 (2004) ABSTRACT
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Title : Profile-based nearest neighbor method for pattern recognition Journal : Journal of the Korean Physical Society, Vol. 44, 599-604 (2004)
논문 NUMBER AUTHOR Keehyung Joo, Julian Lee, Seung-Yeon Kim, Ilsoo Kim, Sung Jong Lee, and Jooyoung Lee TITLE Profile-based nearest neighbor method for pattern recognition ARCHIVE FILE JOURNAL Journal of the Korean Physical Society, Vol. 44, 599-604 (2004) ABSTRACT
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Title : Optimization of potential energy parameters for folding of several proteins Journal : Journal of the Korean Physical Society, Vol. 44, 594-598 (2004)
논문 NUMBER AUTHOR Julian Lee, Seung-Yeon Kim, and Jooyoung Lee TITLE Optimization of potential energy parameters for folding of several proteins ARCHIVE FILE JOURNAL Journal of the Korean Physical Society, Vol. 44, 594-598 (2004) ABSTRACT
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Title : The energy landscape of a BLN protein with beta hairpin shape Journal : Journal of the Korean Physical Society Vol. 44, 589-593 (2004)
논문 NUMBER AUTHOR Seung-Yeon Kim, Sung Jong Lee, and Jooyoung Lee TITLE The energy landscape of a BLN protein with beta hairpin shape ARCHIVE FILE JOURNAL Journal of the Korean Physical Society Vol. 44, 589-593 (2004) ABSTRACT
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Title : Design of a Protein Potential Energy Land scape by Parameter Optimization Journal : J.Phys.Chem.B, Vol. 108, 4525-4534 (2004)
논문 NUMBER AUTHOR Julian Lee, Seung-Yeon Kim, and Jooyoung Lee TITLE Design of a Protein Potential Energy Land scape by Parameter Optimization ARCHIVE FILE JOURNAL J.Phys.Chem.B, Vol. 108, 4525-4534 (2004) ABSTRACT
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Title : Folding of small proteins using a single continuous potential Journal : J.Chem.Phys., Vol. 120, 8271-8276 (2004)
논문 NUMBER AUTHOR Seung-Yeon Kim, Julian Lee, and Jooyoung Lee TITLE Folding of small proteins using a single continuous potential ARCHIVE FILE JOURNAL J.Chem.Phys., Vol. 120, 8271-8276 (2004) ABSTRACT
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Title : Dynamic pathway model for the formation of C60 Journal : J.Chem.Phys., Vol. 120, 4672-4676 (2004)
논문 NUMBER AUTHOR In-Ho Lee, H.Kim, and Jooyoung Lee TITLE Dynamic pathway model for the formation of C60 ARCHIVE FILE JOURNAL J.Chem.Phys., Vol. 120, 4672-4676 (2004) ABSTRACT
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Title : Conformational space annealing and an off-lattice frustrated model protein Journal : J.Chem.Phys., Vol. 119, 10274-10279 (2003)
논문 NUMBER AUTHOR Seung-Yeon Kim, Sung Jong Lee, and Jooyoung Lee TITLE Conformational space annealing and an off-lattice frustrated model protein ARCHIVE FILE JOURNAL J.Chem.Phys., Vol. 119, 10274-10279 (2003) ABSTRACT
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Title : Unbiased global optimization of Lennard Jones clusters for N <= 201 by conformational space annealing method Journal : Phys.Rev.Lett., Vol. 91, 080201 (2003)
논문 NUMBER AUTHOR Julian Lee, In-Ho Lee, and Jooyoung Lee TITLE Unbiased global optimization of Lennard Jones clusters for N <= 201 by conformational space annealing method ARCHIVE FILE JOURNAL Phys.Rev.Lett., Vol. 91, 080201 (2003) ABSTRACT
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Title : Kinetic energy control in the action derived molecular dynamics simulations Journal : Phys.Rev.B, Vol. 68, 064303 (2003)
논문 NUMBER AUTHOR In-Ho Lee, Jooyoung Lee, and Sangsan Lee TITLE Kinetic energy control in the action derived molecular dynamics simulations ARCHIVE FILE JOURNAL Phys.Rev.B, Vol. 68, 064303 (2003) ABSTRACT
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Title : Vortex patterns and infinite degeneracy in the uniformly frustrated XY models and lattice coulomb gas Journal : Phys.Rev.E, Vol. 67, 046120 (2003)
논문 NUMBER AUTHOR Myoung Kwan Ko, Sung Jong Lee, Jooyoung Lee, and Bongsoo Kim TITLE Vortex patterns and infinite degeneracy in the uniformly frustrated XY models and lattice coulomb gas ARCHIVE FILE JOURNAL Phys.Rev.E, Vol. 67, 046120 (2003) ABSTRACT
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Title : Infinite ground state degeneracy and glassy dynamics in the frustrated XY model and lattice coulomb gas with f =1/6 Journal : Physica A, Vol. 315, 314-320 (2002)
논문 NUMBER AUTHOR Sung Jong Lee, Bongsoo Kim, and Jooyoung Lee TITLE Infinite ground state degeneracy and glassy dynamics in the frustrated XY model and lattice coulomb gas with f =1/6 ARCHIVE FILE JOURNAL Physica A, Vol. 315, 314-320 (2002) ABSTRACT
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Title : Evolution of physics based methodology for exploring the conformational energy landscape of proteins Journal : J.Comput.Chem., Vol. 23, 28-34 (2002)
논문 NUMBER AUTHOR Harold A.Scheraga, Jaroslaw Pillardy, Adam Liwo, Jooyoung Lee, Cezary Czaplewski, Daniel R.Ripoll, William J.Wedemeyer, and Yelena A.Arnautova TITLE Evolution of physics based methodology for exploring the conformational energy landscape of proteins ARCHIVE FILE JOURNAL J.Comput.Chem., Vol. 23, 28-34 (2002) ABSTRACT
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Title : Full optimization of linear parameters of a united residue protein potential Journal : J.Phys.Chem.B, Vol. 106, 11647-11657 (2002)
논문 NUMBER AUTHOR Julian Lee, Kibeom Park, and Jooyoung Lee TITLE Full optimization of linear parameters of a united residue protein potential ARCHIVE FILE JOURNAL J.Phys.Chem.B, Vol. 106, 11647-11657 (2002) ABSTRACT
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Title : Recent improvements in prediction of protein structure by global optimization of a potential energy function Journal : Proc.Natl.Acad.Sci., U.S.A., Vol. 98, 2329-2333 (2001)
논문 NUMBER AUTHOR Jaroslaw Pillardy, Cezary Czaplewski, Adam Liwo, Jooyoung Lee, Daniel R.Ripoll, Rajmund Kamierkiewicz, Stanislaw Oldziej, William J.Wedemeyer, Kenneth D.Gibson, Yelena A.Arnautova, Jeffrey Saunders, Yuan-Jie Ye, and Harold A.Scheraga TITLE Recent improvements in prediction of protein structure by global optimization of a potential energy function ARCHIVE FILE JOURNAL Proc.Natl.Acad.Sci., U.S.A., Vol. 98, 2329-2333 (2001) ABSTRACT
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Title : Development of physics-based energy functions that predict medium-resolution structures for proteins of the alpha, beta and alpha/beta structural classes Journal : J.Phys.Chem.B, Vol. 105, 7299-7311 (2001)
논문 NUMBER AUTHOR Jaroslaw Pillardy, Cezary Czaplewski, Adam Liwo, William J.Wedemeyer, Jooyoung Lee, Daniel R.Ripoll, P.Arlukowicz, S.Oldziej, Y.A.Arnautova, and Harold A.Scheraga TITLE Development of physics-based energy functions that predict medium-resolution structures for proteins of the alpha, beta and alpha/beta structural classes ARCHIVE FILE JOURNAL J.Phys.Chem.B, Vol. 105, 7299-7311 (2001) ABSTRACT
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Title : Optimization of parameters in macromolecular potential energy functions by conformational space annealing Journal : J.Phys.Chem.B, Vol. 105, 7291-7298 (2001)
논문 NUMBER AUTHOR Jooyoung Lee, Daniel R.Ripoll, Cezary Czaplewski, Jaroslaw Pillardy, William J.Wedemeyer, and Harold A.Scheraga TITLE Optimization of parameters in macromolecular potential energy functions by conformational space annealing ARCHIVE FILE JOURNAL J.Phys.Chem.B, Vol. 105, 7291-7298 (2001) ABSTRACT
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Title : Hierarchical energy based approach to protein structure prediction; blind test evaluation with CASP3 targets Journal : Int.J.Quant.Chem., Vol. 77, 90-117 (2000)
논문 NUMBER AUTHOR Jooyoung Lee, Adam Liwo, Daniel R.Ripoll, Jaroslaw Pillardy, Jeffrey A.Saunders, Kenneth D.Gibson, and Harold A.Scheraga TITLE Hierarchical energy based approach to protein structure prediction; blind test evaluation with CASP3 targets ARCHIVE FILE JOURNAL Int.J.Quant.Chem., Vol. 77, 90-117 (2000) ABSTRACT
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Title : Efficient parallel algorithms in global optimization of potential energy function Journal : Compt.Phys.Comm., Vol. 128, 399-411 (2000)
논문 NUMBER AUTHOR Jooyoung Lee, Jaroslaw Pillardy, Cezary Czaplewski, Yelena Arnautova, Daniel R.Ripoll, Adam Liwo, Kenneth D.Gibson, Ryszard J.Wawak, and Harold A.Scheraga TITLE Efficient parallel algorithms in global optimization of potential energy function ARCHIVE FILE JOURNAL Compt.Phys.Comm., Vol. 128, 399-411 (2000) ABSTRACT
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Title : Surmounting the Multiple Minima Problem in Protein Folding Journal : J.Global Opt., Vol. 15, 235-260 (1999)
논문 NUMBER AUTHOR Harold A.Scheraga, Jooyoung Lee, Jaroslaw Pillardy, Yuan JieYe, Adam Liwo, and Daniel R.Ripoll TITLE Surmounting the Multiple Minima Problem in Protein Folding ARCHIVE FILE JOURNAL J.Global Opt., Vol. 15, 235-260 (1999) ABSTRACT
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Title : Calculation of Protein Conformation by Global Optimization of a potential energy function Journal : Proteins: Struc.,Func., and Gen., Suppl. Vol. 3, 204-208 (1999)
논문 NUMBER AUTHOR Jooyoung Lee, Adam Liwo, Daniel R.Ripoll, Jaroslaw Pillardy, and Harold A.Scheraga TITLE Calculation of Protein Conformation by Global Optimization of a potential energy function ARCHIVE FILE JOURNAL Proteins: Struc.,Func., and Gen., Suppl. Vol. 3, 204-208 (1999) ABSTRACT
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Title : Conformational space annealing by parallel computations: extensive conformational search of Met-enkephalin and of the 20 residue membrane bound portion of melittin Journal : Int.J.Quant.Chem., Vol. 75, 255-265 (1999)
논문 NUMBER AUTHOR Jooyoung Lee and Harold A.Scheraga TITLE Conformational space annealing by parallel computations: extensive conformational search of Met-enkephalin and of the 20 residue membrane bound portion of melittin ARCHIVE FILE JOURNAL Int.J.Quant.Chem., Vol. 75, 255-265 (1999) ABSTRACT
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Title : Protein structure prediction by global optimization of a potential energy function Journal : Proc.Natl.Acad.Sci., U.S.A., Vol. 96, 5482-5485 (1999)
논문 NUMBER AUTHOR Adam Liwo, Jooyoung Lee, Daniel R.Ripoll, Jaroslaw Pillardy, and Harold A.Scheraga TITLE Protein structure prediction by global optimization of a potential energy function ARCHIVE FILE JOURNAL Proc.Natl.Acad.Sci., U.S.A., Vol. 96, 5482-5485 (1999) ABSTRACT
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Title : Energy based de novo protein folding by conformational space annealing and an off-lattice united residue force field: Application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K Journal : Proc.Natl.Acad.Sci., U.S.A., Vol. 96, 2025-2030 (1999)
논문 NUMBER AUTHOR Jooyoung Lee, Adam Liwo, and Harold A.Scheraga TITLE Energy based de novo protein folding by conformational space annealing and an off-lattice united residue force field: Application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K ARCHIVE FILE JOURNAL Proc.Natl.Acad.Sci., U.S.A., Vol. 96, 2025-2030 (1999) ABSTRACT
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Title : Conformational analysis of the 20 residue membrane bound portion of melittin by conformational space annealing Journal : Biopolymers, Vol. 46, 103-115 (1998)
논문 NUMBER AUTHOR Jooyoung Lee, Harold A.Scheraga, and S.Rackovsky TITLE Conformational analysis of the 20 residue membrane bound portion of melittin by conformational space annealing ARCHIVE FILE JOURNAL Biopolymers, Vol. 46, 103-115 (1998) ABSTRACT
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Title : New Optimization Method for Conformational Energy Calculations on Polypeptides: Conformational Space Annealing Journal : J.Comput.Chem., Vol. 18, 1222-1232 (1997)
논문 NUMBER AUTHOR Jooyoung Lee, Harold A.Scheraga, and S.Rackovsky TITLE New Optimization Method for Conformational Energy Calculations on Polypeptides: Conformational Space Annealing ARCHIVE FILE JOURNAL J.Comput.Chem., Vol. 18, 1222-1232 (1997) ABSTRACT
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Title : Computational Study of Packing a Collagen-like molecule: Quasi-hexagonal vs. Journal : Biopolymers, Vol. 40, 595-607 (1996)
논문 NUMBER AUTHOR Jooyoung Lee, Harold A.Scheraga, and S.Rackovsky TITLE Computational Study of Packing a Collagen-like molecule: Quasi-hexagonal vs. ARCHIVE FILE JOURNAL Biopolymers, Vol. 40, 595-607 (1996) ABSTRACT
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Title : Method to study relaxation of metastable phase: Macroscopic mean-field dynamics Journal : Phys.Rev.E, Vol. 50, 356-372 (1995)
논문 NUMBER AUTHOR Jooyoung Lee, M.A.Novotny, and P.A.Rikvold TITLE Method to study relaxation of metastable phase: Macroscopic mean-field dynamics ARCHIVE FILE JOURNAL Phys.Rev.E, Vol. 50, 356-372 (1995) ABSTRACT
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Title : New Theoretical Methodology for Elucidating the Solution Structure of Peptides from NMR Data. 1. The Relative Contribution of Low Energy Microstates to the Partition Function Journal : J.Phys.Chem., Vol. 99, 4847-4854 (1995)
논문 NUMBER AUTHOR H.Meirovitch, E.Meirovitch, and Jooyoung Lee TITLE New Theoretical Methodology for Elucidating the Solution Structure of Peptides from NMR Data. 1. The Relative Contribution of Low Energy Microstates to the Partition Function ARCHIVE FILE JOURNAL J.Phys.Chem., Vol. 99, 4847-4854 (1995) ABSTRACT
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Title : Optimization by Multicanonical Annealing and the Traveling Salesman Problem Journal : Phys.Rev.E, Vol. 50, Rapid Communications, R651-R654 (1994)
논문 NUMBER AUTHOR Jooyoung Lee and M.Y.Choi TITLE Optimization by Multicanonical Annealing and the Traveling Salesman Problem ARCHIVE FILE JOURNAL Phys.Rev.E, Vol. 50, Rapid Communications, R651-R654 (1994) ABSTRACT
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Title : New Monte Carlo Algorithm : Entropic Sampling Journal : Phys.Rev.Lett., Vol. 71, 211-214 ; Erratum Vol. 71, 2353 (1993)
논문 NUMBER AUTHOR Jooyoung Lee TITLE New Monte Carlo Algorithm : Entropic Sampling ARCHIVE FILE JOURNAL Phys.Rev.Lett., Vol. 71, 211-214 ; Erratum Vol. 71, 2353 (1993) ABSTRACT
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Title : First Order Melting Transition of the Hard Disk System Journal : Phys.Rev.B, Vol. 46, Rapid Communications, 11190-11193 (1992)
논문 NUMBER AUTHOR Jooyoung Lee and Katherine J.Strandburg TITLE First Order Melting Transition of the Hard Disk System ARCHIVE FILE JOURNAL Phys.Rev.B, Vol. 46, Rapid Communications, 11190-11193 (1992) ABSTRACT
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Title : Non-universal behavior and first-order transitions in a coupled XY Ising model Journal : Phys.Rev.B, Vol. 44, 4819-4831 (1991)
논문 NUMBER AUTHOR Jooyoung Lee, E.Granato, and J.M.Kosterlitz TITLE Non-universal behavior and first-order transitions in a coupled XY Ising model ARCHIVE FILE JOURNAL Phys.Rev.B, Vol. 44, 4819-4831 (1991) ABSTRACT
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Title : Monte Carlo Study of frustrated XY models on a triangular and square lattice Journal : Phys.Rev.B, Vol. 43, Rapid Communications, 11531-11534 (1991)
논문 NUMBER AUTHOR Jooyoung Lee, J.M.Kosterlitz, and E.Granato TITLE Monte Carlo Study of frustrated XY models on a triangular and square lattice ARCHIVE FILE JOURNAL Phys.Rev.B, Vol. 43, Rapid Communications, 11531-11534 (1991) ABSTRACT
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Title : Phase transitions in coupled XY Ising systems Journal : Phys.Rev.Lett., Vol. 66, 1090-1093 (1991)
논문 NUMBER AUTHOR E.Granato, J.M.Kosterlitz, Jooyoung Lee, and M.P.Nightingale TITLE Phase transitions in coupled XY Ising systems ARCHIVE FILE JOURNAL Phys.Rev.Lett., Vol. 66, 1090-1093 (1991) ABSTRACT
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Title : Finite Size Scaling and Monte Carlo Simulations of First Order Phase Transitions Journal : Phys.Rev.B, Vol. 43, 3265-3277 (1991)
논문 NUMBER AUTHOR Jooyoung Lee and J.M.Kosterlitz TITLE Finite Size Scaling and Monte Carlo Simulations of First Order Phase Transitions ARCHIVE FILE JOURNAL Phys.Rev.B, Vol. 43, 3265-3277 (1991) ABSTRACT
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Title : Three dimensional q-state Potts model : Monte Carlo study near q=3 Journal : Phys.Rev.B, Vol. 43, Rapid Communications, 1268-1271 (1991)
논문 NUMBER AUTHOR Jooyoung Lee and J.M.Kosterlitz TITLE Three dimensional q-state Potts model : Monte Carlo study near q=3 ARCHIVE FILE JOURNAL Phys.Rev.B, Vol. 43, Rapid Communications, 1268-1271 (1991) ABSTRACT
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Title : New Numerical Method to Study Phase Transitions Journal : Phys.Rev.Lett., Vol. 65, 137-140 (1990)
논문 NUMBER AUTHOR Jooyoung Lee and J.M.Kosterlitz TITLE New Numerical Method to Study Phase Transitions ARCHIVE FILE JOURNAL Phys.Rev.Lett., Vol. 65, 137-140 (1990) ABSTRACT
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Title : Phase Diagram for the Cubic Model of HoP in a Magnetic Field Journal : Journal of the Korean Physical Society, Vol. 18, 7-11 (1985)
논문 NUMBER AUTHOR Jooyoung Lee, Doochul Kim and Peter M.Levy TITLE Phase Diagram for the Cubic Model of HoP in a Magnetic Field ARCHIVE FILE JOURNAL Journal of the Korean Physical Society, Vol. 18, 7-11 (1985) ABSTRACT
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Title : Phase Transition of the FCC Ising Ferromagnet with Competing Interaction Journal : Journal of the Korean Physical Society, Vol. 17, 122-125 (1984)
논문 NUMBER AUTHOR Jong Hoon Oh, Jooyoung Lee, and Doochul Kim TITLE Phase Transition of the FCC Ising Ferromagnet with Competing Interaction ARCHIVE FILE JOURNAL Journal of the Korean Physical Society, Vol. 17, 122-125 (1984) ABSTRACT
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- School of School of Computational Sciences, Korea Institute for Advanced Study
서울특별시 동대문구 회기로 85(서울특별시 동대문구 청량리동 207-43) 우:130-722
